J3_8ETI_004

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

8ETI|1|1|A|1290

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ETI_004 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.3147

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8ETI|1|1|G|1261
8ETI|1|1|A|1262
8ETI|1|1|C|1263
*
8ETI|1|1|G|1287
8ETI|1|1|C|1288
8ETI|1|1|U|1289
8ETI|1|1|A|1290
8ETI|1|1|A|1291
8ETI|1|1|G|1292
8ETI|1|1|G|1293
*
8ETI|1|1|C|1308
8ETI|1|1|A|1309
8ETI|1|1|C|1310

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain W

Ribosome assembly factor mrt4