J3_8ETI_009
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAG*CGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8ETI|1|1|U|351, 8ETI|1|1|A|359, 8ETI|1|2|U|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ETI_009 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.1497
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
8ETI|1|1|C|348
8ETI|1|1|G|349
8ETI|1|1|A|350
8ETI|1|1|U|351
8ETI|1|1|A|352
8ETI|1|1|G|353
8ETI|1|1|C|354
8ETI|1|1|G|355
8ETI|1|1|A|356
8ETI|1|1|A|357
8ETI|1|1|C|358
8ETI|1|1|A|359
8ETI|1|1|A|360
8ETI|1|1|G|361
8ETI|1|1|U|362
8ETI|1|1|A|363
8ETI|1|1|G|364
*
8ETI|1|1|C|371
8ETI|1|1|G|372
8ETI|1|1|A|373
8ETI|1|1|A|374
8ETI|1|1|A|375
8ETI|1|1|G|376
*
8ETI|1|2|C|29
8ETI|1|2|U|30
8ETI|1|2|U|31
8ETI|1|2|G|32
Current chains
- Chain 1
- RNA (1564-MER)
- Chain 2
- RNA (152-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4-B
- Chain Y
- 60S ribosomal protein L26
- Chain j
- 60S ribosomal protein L37-B
- Chain v
- Nucleolar protein 16
- Chain x
- Brix domain-containing protein C4F8.04
Coloring options: