J3_8EUB_016

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EUB_016 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1097

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EUB|1|B5|C|1161
8EUB|1|B5|C|1162
8EUB|1|B5|A|1163
8EUB|1|B5|G|1164
*
8EUB|1|B5|C|1581
8EUB|1|B5|U|1582
8EUB|1|B5|A|1583
8EUB|1|B5|G|1584
8EUB|1|B5|U|1585
8EUB|1|B5|A|1586
8EUB|1|B5|A|1587
*
8EUB|1|B5|U|1609
8EUB|1|B5|G|1610
8EUB|1|B5|A|1611
8EUB|1|B5|U|1612
8EUB|1|B5|U|1613
8EUB|1|B5|A|1614
8EUB|1|B5|C|1615
8EUB|1|B5|G|1616

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

RPS28A isoform 1