J3_8EUB_019
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8EUB|1|B5|A|1217, 8EUB|1|B5|G|1445, 8EUB|1|B5|C|1447
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EUB_019 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1282
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8EUB|1|B5|C|1215
8EUB|1|B5|C|1216
8EUB|1|B5|A|1217
8EUB|1|B5|G|1218
8EUB|1|B5|A|1219
8EUB|1|B5|C|1220
*
8EUB|1|B5|G|1263
8EUB|1|B5|G|1264
8EUB|1|B5|G|1265
8EUB|1|B5|U|1266
8EUB|1|B5|G|1267
*
8EUB|1|B5|U|1442
8EUB|1|B5|U|1443
8EUB|1|B5|A|1444
8EUB|1|B5|G|1445
8EUB|1|B5|A|1446
8EUB|1|B5|C|1447
8EUB|1|B5|G|1448
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain BM
- 40S ribosomal protein S12
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain DC
- Elongation factor 2
Coloring options: