J3_8EUB_025
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8EUB|1|A1|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EUB_025 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.0875
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8EUB|1|A1|C|185
8EUB|1|A1|U|186
8EUB|1|A1|A|187
8EUB|1|A1|U|188
8EUB|1|A1|G|189
*
8EUB|1|A1|C|205
8EUB|1|A1|G|206
8EUB|1|A1|U|207
8EUB|1|A1|C|208
8EUB|1|A1|A|209
8EUB|1|A1|U|210
8EUB|1|A1|A|211
8EUB|1|A1|G|212
8EUB|1|A1|A|213
8EUB|1|A1|G|214
*
8EUB|1|A1|C|226
8EUB|1|A1|G|227
8EUB|1|A1|U|228
8EUB|1|A1|G|229
8EUB|1|A1|U|230
8EUB|1|A1|G|231
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AY
- 60S ribosomal protein L26-A
Coloring options: