J3_8EV7_027

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8EV7|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV7_027 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0809

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8EV7|1|2a|C|826
8EV7|1|2a|U|827
8EV7|1|2a|A|828
8EV7|1|2a|G|829
*
8EV7|1|2a|C|857
8EV7|1|2a|G|858
8EV7|1|2a|A|859
8EV7|1|2a|A|860
8EV7|1|2a|G|861
*
8EV7|1|2a|C|868
8EV7|1|2a|G|869
8EV7|1|2a|U|870
8EV7|1|2a|U|871
8EV7|1|2a|A|872
8EV7|1|2a|A|873
8EV7|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8