J3_8EVP_015
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8EVP|1|B5|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_015 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1459
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|C|1036
8EVP|1|B5|U|1037
8EVP|1|B5|A|1038
*
8EVP|1|B5|U|1078
8EVP|1|B5|U|1079
8EVP|1|B5|A|1080
8EVP|1|B5|C|1081
8EVP|1|B5|G|1082
*
8EVP|1|B5|C|1089
8EVP|1|B5|A|1090
8EVP|1|B5|A|1091
8EVP|1|B5|A|1092
8EVP|1|B5|G|1093
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BA
- 40S ribosomal protein S0-A
- Chain BV
- 40S ribosomal protein S21-A
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- RPS26B isoform 1
- Chain Bb
- 40S ribosomal protein S27-A
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