J3_8EVP_020
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_020 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.4111
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|U|1891
8EVP|1|B5|C|1892
8EVP|1|B5|U|1893
8EVP|1|B5|U|1894
8EVP|1|B5|A|1895
8EVP|1|B5|G|1896
*
8EVP|1|B5|C|1935
8EVP|1|B5|G|1936
8EVP|1|B5|A|1937
8EVP|1|B5|G|1938
8EVP|1|B5|A|1939
8EVP|1|B5|C|1940
*
8EVP|1|B5|G|2027
8EVP|1|B5|C|2028
8EVP|1|B5|A|2029
8EVP|1|B5|A|2030
8EVP|1|B5|U|2031
8EVP|1|B5|A|2032
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BD
- RPS3 isoform 1
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: