J3_8EVP_026
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8EVP|1|A1|U|343, 8EVP|1|A1|A|351, 8EVP|1|A4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_026 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0454
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8EVP|1|A1|C|340
8EVP|1|A1|G|341
8EVP|1|A1|A|342
8EVP|1|A1|U|343
8EVP|1|A1|A|344
8EVP|1|A1|G|345
8EVP|1|A1|C|346
8EVP|1|A1|G|347
8EVP|1|A1|A|348
8EVP|1|A1|A|349
8EVP|1|A1|C|350
8EVP|1|A1|A|351
8EVP|1|A1|A|352
8EVP|1|A1|G|353
8EVP|1|A1|U|354
8EVP|1|A1|A|355
8EVP|1|A1|C|356
*
8EVP|1|A1|G|363
8EVP|1|A1|G|364
8EVP|1|A1|A|365
8EVP|1|A1|A|366
8EVP|1|A1|A|367
8EVP|1|A1|G|368
*
8EVP|1|A4|C|21
8EVP|1|A4|U|22
8EVP|1|A4|U|23
8EVP|1|A4|G|24
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AY
- 60S ribosomal protein L26-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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