J3_8EVP_028
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8EVP|1|A1|A|398, 8EVP|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_028 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0752
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8EVP|1|A1|A|369
8EVP|1|A1|U|370
8EVP|1|A1|G|371
8EVP|1|A1|A|372
8EVP|1|A1|A|373
8EVP|1|A1|A|374
8EVP|1|A1|A|375
8EVP|1|A1|G|376
8EVP|1|A1|A|377
8EVP|1|A1|A|378
8EVP|1|A1|C|379
*
8EVP|1|A1|G|390
8EVP|1|A1|A|391
8EVP|1|A1|G|392
8EVP|1|A1|U|393
8EVP|1|A1|G|394
8EVP|1|A1|A|395
8EVP|1|A1|A|396
8EVP|1|A1|A|397
8EVP|1|A1|A|398
8EVP|1|A1|A|399
8EVP|1|A1|G|400
8EVP|1|A1|U|401
8EVP|1|A1|A|402
8EVP|1|A1|C|403
8EVP|1|A1|G|404
*
8EVP|1|A4|C|19
8EVP|1|A4|U|20
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Al
- 60S ribosomal protein L39
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