J3_8EVP_031
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8EVP|1|A1|A|1065, 8EVP|1|A1|U|1094, 8EVP|1|A1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_031 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.1615
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8EVP|1|A1|U|986
8EVP|1|A1|U|987
*
8EVP|1|A1|A|1062
8EVP|1|A1|G|1063
8EVP|1|A1|A|1064
8EVP|1|A1|A|1065
8EVP|1|A1|G|1066
*
8EVP|1|A1|C|1092
8EVP|1|A1|A|1093
8EVP|1|A1|U|1094
8EVP|1|A1|U|1095
8EVP|1|A1|U|1096
8EVP|1|A1|G|1097
8EVP|1|A1|A|1098
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L7-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: