J3_8EVP_037
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*(OMG)GUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8EVP|1|A1|C|2760, 8EVP|1|A1|C|2797
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_037 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0462
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8EVP|1|A1|G|2651
8EVP|1|A1|U|2652
8EVP|1|A1|C|2653
*
8EVP|1|A1|G|2754
8EVP|1|A1|C|2755
8EVP|1|A1|C|2756
8EVP|1|A1|U|2757
8EVP|1|A1|A|2758
8EVP|1|A1|U|2759
8EVP|1|A1|C|2760
8EVP|1|A1|G|2761
8EVP|1|A1|A|2762
8EVP|1|A1|U|2763
8EVP|1|A1|C|2764
8EVP|1|A1|C|2765
*
8EVP|1|A1|OMG|2793
8EVP|1|A1|G|2794
8EVP|1|A1|U|2795
8EVP|1|A1|G|2796
8EVP|1|A1|C|2797
8EVP|1|A1|C|2798
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: