J3_8EVP_042

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8EVP|1|B5|A|47

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVP_042 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.07

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8EVP|1|B5|A|41
8EVP|1|B5|G|42
8EVP|1|B5|A|43
8EVP|1|B5|U|44
8EVP|1|B5|U|45
8EVP|1|B5|A|46
8EVP|1|B5|A|47
8EVP|1|B5|G|48
*
8EVP|1|B5|C|431
8EVP|1|B5|G|432
8EVP|1|B5|C|433
8EVP|1|B5|G|434
8EVP|1|B5|C|435
8EVP|1|B5|A2M|436
8EVP|1|B5|A|437
8EVP|1|B5|A|438
8EVP|1|B5|U|439
*
8EVP|1|B5|A|464
8EVP|1|B5|G|465
8EVP|1|B5|U|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A