J3_8EVP_046
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 8EVP|1|B5|A|1929
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_046 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.0665
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8EVP|1|B5|U|1901
8EVP|1|B5|G|1902
*
8EVP|1|B5|U|1911
8EVP|1|B5|G|1912
8EVP|1|B5|U|1913
8EVP|1|B5|C|1914
*
8EVP|1|B5|G|1926
8EVP|1|B5|A|1927
8EVP|1|B5|U|1928
8EVP|1|B5|A|1929
8EVP|1|B5|A|1930
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BA
- 40S ribosomal protein S0-A
- Chain BC
- RPS2 isoform 1
- Chain BR
- 40S ribosomal protein S17-A
Coloring options: