J3_8EVP_047
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8EVP|1|B5|U|1998, 8EVP|1|B5|U|2021, 8EVP|1|B5|U|2022
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_047 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1168
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|A|1944
8EVP|1|B5|A|1945
8EVP|1|B5|C|1946
*
8EVP|1|B5|G|1994
8EVP|1|B5|G|1995
8EVP|1|B5|A|1996
8EVP|1|B5|C|1997
8EVP|1|B5|U|1998
8EVP|1|B5|A|1999
*
8EVP|1|B5|U|2015
8EVP|1|B5|G|2016
8EVP|1|B5|G|2017
8EVP|1|B5|A|2018
8EVP|1|B5|A|2019
8EVP|1|B5|G|2020
8EVP|1|B5|U|2021
8EVP|1|B5|U|2022
8EVP|1|B5|U|2023
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-like protein
Coloring options: