J3_8EVQ_037
3D structure
- PDB id
- 8EVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8EVQ|1|A3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVQ_037 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0875
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8EVQ|1|A3|C|9
8EVQ|1|A3|C|10
8EVQ|1|A3|A|11
8EVQ|1|A3|U|12
8EVQ|1|A3|A|13
8EVQ|1|A3|U|14
*
8EVQ|1|A3|A|66
8EVQ|1|A3|G|67
*
8EVQ|1|A3|U|111
8EVQ|1|A3|G|112
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- RPL5 isoform 1
- Chain AI
- RPL10 isoform 1
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: