J3_8EVR_032
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8EVR|1|A4|U|60, 8EVR|1|A4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVR_032 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0785
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8EVR|1|A4|A|44
8EVR|1|A4|C|45
*
8EVR|1|A4|G|58
8EVR|1|A4|A|59
8EVR|1|A4|U|60
8EVR|1|A4|A|61
8EVR|1|A4|C|62
8EVR|1|A4|G|63
8EVR|1|A4|U|64
*
8EVR|1|A4|A|96
8EVR|1|A4|A|97
8EVR|1|A4|U|98
8EVR|1|A4|C|99
8EVR|1|A4|U|100
Current chains
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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