3D structure

PDB id
8EVT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
8EVT|1|A1|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EVT_009 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.0806
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

8EVT|1|A1|C|2664
8EVT|1|A1|U|2665
8EVT|1|A1|C|2666
*
8EVT|1|A1|G|2690
8EVT|1|A1|A|2691
8EVT|1|A1|A|2692
*
8EVT|1|A1|U|2701
8EVT|1|A1|A|2702
8EVT|1|A1|A|2703
8EVT|1|A1|A|2704
8EVT|1|A1|A|2705
8EVT|1|A1|G|2706

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A3
5S ribosomal RNA; 5S rRNA
Chain AD
RPL5 isoform 1
Chain AJ
RPL11A isoform 1
Chain AT
60S ribosomal protein L21-A

Coloring options:


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