J3_8EWB_016
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EWB_016 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.128
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8EWB|1|B5|C|1161
8EWB|1|B5|C|1162
8EWB|1|B5|A|1163
8EWB|1|B5|G|1164
*
8EWB|1|B5|C|1581
8EWB|1|B5|U|1582
8EWB|1|B5|A|1583
8EWB|1|B5|G|1584
8EWB|1|B5|U|1585
8EWB|1|B5|A|1586
8EWB|1|B5|A|1587
*
8EWB|1|B5|U|1609
8EWB|1|B5|G|1610
8EWB|1|B5|A|1611
8EWB|1|B5|U|1612
8EWB|1|B5|U|1613
8EWB|1|B5|A|1614
8EWB|1|B5|C|1615
8EWB|1|B5|G|1616
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain Bc
- RPS28A isoform 1
- Chain EC
- Taura syndrome virus (TSV) internal ribosome entry site (IRES) RNA
Coloring options: