J3_8EWC_016

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EWC_016 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1642

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EWC|1|B5|C|1161
8EWC|1|B5|C|1162
8EWC|1|B5|A|1163
8EWC|1|B5|G|1164
*
8EWC|1|B5|C|1581
8EWC|1|B5|U|1582
8EWC|1|B5|A|1583
8EWC|1|B5|G|1584
8EWC|1|B5|U|1585
8EWC|1|B5|A|1586
8EWC|1|B5|A|1587
*
8EWC|1|B5|U|1609
8EWC|1|B5|G|1610
8EWC|1|B5|A|1611
8EWC|1|B5|U|1612
8EWC|1|B5|U|1613
8EWC|1|B5|A|1614
8EWC|1|B5|C|1615
8EWC|1|B5|G|1616

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

RPS28A isoform 1