J3_8EYQ_001

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8EYQ|1|A|U|871, 8EYQ|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EYQ_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1538

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8EYQ|1|A|C|826
8EYQ|1|A|U|827
8EYQ|1|A|U|828
8EYQ|1|A|G|829
*
8EYQ|1|A|C|857
8EYQ|1|A|G|858
8EYQ|1|A|G|859
8EYQ|1|A|A|860
8EYQ|1|A|G|861
*
8EYQ|1|A|C|868
8EYQ|1|A|G|869
8EYQ|1|A|U|870
8EYQ|1|A|U|871
8EYQ|1|A|A|872
8EYQ|1|A|A|873
8EYQ|1|A|G|874

Current chains

Chain A

16S_rRNA

Nearby chains

Chain H

30S ribosomal protein S8