J3_8EYQ_008

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8EYQ|1|A|U|1240, 8EYQ|1|A|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EYQ_008 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1663

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8EYQ|1|A|C|1237
8EYQ|1|A|A|1238
8EYQ|1|A|A|1239
8EYQ|1|A|U|1240
8EYQ|1|A|G|1241
*
8EYQ|1|A|C|1296
8EYQ|1|A|G|1297
8EYQ|1|A|U|1298
8EYQ|1|A|A|1299
8EYQ|1|A|G|1300
8EYQ|1|A|U|1301
8EYQ|1|A|C|1302
8EYQ|1|A|C|1303
*
8EYQ|1|A|G|1334
8EYQ|1|A|U|1335
8EYQ|1|A|C|1336
8EYQ|1|A|G|1337

Current chains

Chain A

16S_rRNA

Nearby chains

Chain M

30S ribosomal protein S13