J3_8EYT_001

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8EYT|1|A|U|871, 8EYT|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EYT_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.082

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8EYT|1|A|C|826
8EYT|1|A|U|827
8EYT|1|A|U|828
8EYT|1|A|G|829
*
8EYT|1|A|C|857
8EYT|1|A|G|858
8EYT|1|A|G|859
8EYT|1|A|A|860
8EYT|1|A|G|861
*
8EYT|1|A|C|868
8EYT|1|A|G|869
8EYT|1|A|U|870
8EYT|1|A|U|871
8EYT|1|A|A|872
8EYT|1|A|A|873
8EYT|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8