3D structure

PDB id
8EYT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S_delta_ksgA+KsgA complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8EYT_004 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.14
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8EYT|1|A|U|943
8EYT|1|A|G|944
8EYT|1|A|G|945
8EYT|1|A|A|946
*
8EYT|1|A|U|1235
8EYT|1|A|A|1236
8EYT|1|A|C|1237
*
8EYT|1|A|G|1337
8EYT|1|A|G|1338
8EYT|1|A|A|1339
8EYT|1|A|A|1340

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain M
30S ribosomal protein S13

Coloring options:


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