J3_8FC2_075

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8FC2|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC2_075 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1391

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8FC2|1|2a|C|990
8FC2|1|2a|U|991
8FC2|1|2a|U|992
8FC2|1|2a|G|993
8FC2|1|2a|A|994
8FC2|1|2a|C|995
8FC2|1|2a|A|996
8FC2|1|2a|U|997
*
8FC2|1|2a|A|1044
8FC2|1|2a|C|1045
8FC2|1|2a|A|1046
8FC2|1|2a|G|1047
*
8FC2|1|2a|C|1210
8FC2|1|2a|U|1211
8FC2|1|2a|U|1212
8FC2|1|2a|A|1213
8FC2|1|2a|C|1214
8FC2|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z