J3_8FC3_054

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8FC3|1|2A|U|504, 8FC3|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC3_054 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0524

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FC3|1|2A|G|30
8FC3|1|2A|C|31
*
8FC3|1|2A|G|474
8FC3|1|2A|U|475
8FC3|1|2A|G|476
8FC3|1|2A|A|477
8FC3|1|2A|A|478
8FC3|1|2A|A|479
8FC3|1|2A|A|480
8FC3|1|2A|G|481
8FC3|1|2A|A|482
8FC3|1|2A|A|483
8FC3|1|2A|C|484
*
8FC3|1|2A|G|496
8FC3|1|2A|A|497
8FC3|1|2A|G|498
8FC3|1|2A|U|499
8FC3|1|2A|G|500
8FC3|1|2A|A|501
8FC3|1|2A|A|502
8FC3|1|2A|A|503
8FC3|1|2A|U|504
8FC3|1|2A|A|505
8FC3|1|2A|G|506
8FC3|1|2A|A|507
8FC3|1|2A|G|508
8FC3|1|2A|C|509
8FC3|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24