J3_8FC4_058

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8FC4|1|2A|U|448, 8FC4|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC4_058 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0485

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8FC4|1|2A|C|32
8FC4|1|2A|U|33
8FC4|1|2A|C|34
8FC4|1|2A|G|35
*
8FC4|1|2A|C|445
8FC4|1|2A|G|446
8FC4|1|2A|A|447
8FC4|1|2A|U|448
8FC4|1|2A|A|449
8FC4|1|2A|G|450
8FC4|1|2A|C|451
8FC4|1|2A|G|452
8FC4|1|2A|C|453
8FC4|1|2A|A|454
8FC4|1|2A|C|455
8FC4|1|2A|C|456
8FC4|1|2A|A|457
8FC4|1|2A|G|458
8FC4|1|2A|U|459
8FC4|1|2A|A|460
8FC4|1|2A|C|461
*
8FC4|1|2A|G|468
8FC4|1|2A|G|469
8FC4|1|2A|A|470
8FC4|1|2A|A|471
8FC4|1|2A|A|472
8FC4|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23