J3_8FC4_073

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8FC4|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC4_073 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1667

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8FC4|1|2a|C|990
8FC4|1|2a|U|991
8FC4|1|2a|U|992
8FC4|1|2a|G|993
8FC4|1|2a|A|994
8FC4|1|2a|C|995
8FC4|1|2a|A|996
8FC4|1|2a|U|997
*
8FC4|1|2a|A|1044
8FC4|1|2a|C|1045
8FC4|1|2a|A|1046
8FC4|1|2a|G|1047
*
8FC4|1|2a|C|1210
8FC4|1|2a|U|1211
8FC4|1|2a|U|1212
8FC4|1|2a|A|1213
8FC4|1|2a|C|1214
8FC4|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z