J3_8FC5_027

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8FC5|1|2a|U|871, 8FC5|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC5_027 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0674

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8FC5|1|2a|C|826
8FC5|1|2a|U|827
8FC5|1|2a|A|828
8FC5|1|2a|G|829
*
8FC5|1|2a|C|857
8FC5|1|2a|G|858
8FC5|1|2a|A|859
8FC5|1|2a|A|860
8FC5|1|2a|G|861
*
8FC5|1|2a|C|868
8FC5|1|2a|G|869
8FC5|1|2a|U|870
8FC5|1|2a|U|871
8FC5|1|2a|A|872
8FC5|1|2a|A|873
8FC5|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8