J3_8FC6_055

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8FC6|1|2A|U|504, 8FC6|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC6_055 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0484

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8FC6|1|2A|G|30
8FC6|1|2A|C|31
*
8FC6|1|2A|G|474
8FC6|1|2A|U|475
8FC6|1|2A|G|476
8FC6|1|2A|A|477
8FC6|1|2A|A|478
8FC6|1|2A|A|479
8FC6|1|2A|A|480
8FC6|1|2A|G|481
8FC6|1|2A|A|482
8FC6|1|2A|A|483
8FC6|1|2A|C|484
*
8FC6|1|2A|G|496
8FC6|1|2A|A|497
8FC6|1|2A|G|498
8FC6|1|2A|U|499
8FC6|1|2A|G|500
8FC6|1|2A|A|501
8FC6|1|2A|A|502
8FC6|1|2A|A|503
8FC6|1|2A|U|504
8FC6|1|2A|A|505
8FC6|1|2A|G|506
8FC6|1|2A|A|507
8FC6|1|2A|G|508
8FC6|1|2A|C|509
8FC6|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24