J3_8FIZ_004

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8FIZ|1|AA|U|871, 8FIZ|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1007

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8FIZ|1|AA|C|826
8FIZ|1|AA|U|827
8FIZ|1|AA|U|828
8FIZ|1|AA|G|829
*
8FIZ|1|AA|C|857
8FIZ|1|AA|G|858
8FIZ|1|AA|G|859
8FIZ|1|AA|A|860
8FIZ|1|AA|G|861
*
8FIZ|1|AA|C|868
8FIZ|1|AA|G|869
8FIZ|1|AA|U|870
8FIZ|1|AA|U|871
8FIZ|1|AA|A|872
8FIZ|1|AA|A|873
8FIZ|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AJ

30S ribosomal protein S2

Chain AQ

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21