J3_8FIZ_005

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_005 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1293

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8FIZ|1|AA|U|943
8FIZ|1|AA|G|944
8FIZ|1|AA|G|945
8FIZ|1|AA|A|946
*
8FIZ|1|AA|U|1235
8FIZ|1|AA|A|1236
8FIZ|1|AA|C|1237
*
8FIZ|1|AA|G|1337
8FIZ|1|AA|G|1338
8FIZ|1|AA|A|1339
8FIZ|1|AA|A|1340

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S13

Chain AK

30S ribosomal protein S9

Chain BB

Transfer RNA; tRNA