J3_8FIZ_016
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases (A, C, G, U)
- 1609A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FIZ_016 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.095
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44702.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FIZ|1|BA|C|1306
8FIZ|1|BA|A|1307
8FIZ|1|BA|A|1308
8FIZ|1|BA|G|1309
*
8FIZ|1|BA|C|1605
8FIZ|1|BA|C|1606
8FIZ|1|BA|C|1607
8FIZ|1|BA|A|1608
8FIZ|1|BA|A|1609
8FIZ|1|BA|A|1610
8FIZ|1|BA|C|1611
*
8FIZ|1|BA|G|1620
8FIZ|1|BA|U|1621
8FIZ|1|BA|G|1622
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BN
- 50S ribosomal protein L34
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