J3_8FIZ_016

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases (A, C, G, U)

1609A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_016 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.095

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|BA|C|1306
8FIZ|1|BA|A|1307
8FIZ|1|BA|A|1308
8FIZ|1|BA|G|1309
*
8FIZ|1|BA|C|1605
8FIZ|1|BA|C|1606
8FIZ|1|BA|C|1607
8FIZ|1|BA|A|1608
8FIZ|1|BA|A|1609
8FIZ|1|BA|A|1610
8FIZ|1|BA|C|1611
*
8FIZ|1|BA|G|1620
8FIZ|1|BA|U|1621
8FIZ|1|BA|G|1622

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L34