J3_8FIZ_023

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8FIZ|1|AA|C|48, 8FIZ|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_023 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1034

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8FIZ|1|AA|G|46
8FIZ|1|AA|C|47
8FIZ|1|AA|C|48
8FIZ|1|AA|U|49
8FIZ|1|AA|A|50
8FIZ|1|AA|A|51
8FIZ|1|AA|C|52
*
8FIZ|1|AA|G|359
8FIZ|1|AA|G|360
8FIZ|1|AA|G|361
8FIZ|1|AA|G|362
8FIZ|1|AA|A|363
8FIZ|1|AA|A|364
8FIZ|1|AA|U|365
8FIZ|1|AA|A|366
8FIZ|1|AA|U|367
*
8FIZ|1|AA|A|393
8FIZ|1|AA|G|394
8FIZ|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S12

Chain AO

30S ribosomal protein S16