J3_8FKV_005
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8FKV|1|L3|A|4464, 8FKV|1|L3|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FKV_005 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.228
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FKV|1|L3|U|4463
8FKV|1|L3|A|4464
8FKV|1|L3|U|4465
8FKV|1|L3|C|4466
*
8FKV|1|L3|G|4491
8FKV|1|L3|U|4492
8FKV|1|L3|U|4493
*
8FKV|1|L3|A|4507
8FKV|1|L3|C|4508
8FKV|1|L3|U|4509
8FKV|1|L3|A|4510
8FKV|1|L3|A|4511
8FKV|1|L3|U|4512
8FKV|1|L3|A|4513
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L23
- Chain LN
- 60S ribosomal protein L3
- Chain NB
- Guanine nucleotide-binding protein-like 3
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain NI
- ATP-dependent RNA helicase DDX54
- Chain NK
- Protein LLP homolog
- Chain SR
- GTP-binding protein 4
Coloring options: