J3_8FKV_010

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AC*GAGAAUU*ACACU

Length

14 nucleotides

Bulged bases

8FKV|1|L1|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FKV_010 not in the Motif Atlas

Homologous match to J3_8C3A_060

Geometric discrepancy: 0.1946

The information below is about J3_8C3A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

8FKV|1|L1|A|44
8FKV|1|L1|C|45
*
8FKV|1|L1|G|58
8FKV|1|L1|A|59
8FKV|1|L1|G|60
8FKV|1|L1|A|61
8FKV|1|L1|A|62
8FKV|1|L1|U|63
8FKV|1|L1|U|64
*
8FKV|1|L1|A|95
8FKV|1|L1|C|96
8FKV|1|L1|A|97
8FKV|1|L1|C|98
8FKV|1|L1|U|99

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain LH

60S ribosomal protein L23a

Chain LS

60S ribosomal protein L35

Chain LW

60S ribosomal protein L37