J3_8FKY_016
3D structure
- PDB id
- 8FKY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- UG*CGACC*GA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FKY_016 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.2924
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FKY|1|L3|U|2575
8FKY|1|L3|G|2576
*
8FKY|1|L3|C|2585
8FKY|1|L3|G|2586
8FKY|1|L3|A|2587
8FKY|1|L3|C|2588
8FKY|1|L3|C|2589
*
8FKY|1|L3|G|2756
8FKY|1|L3|A|2757
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LJ
- 60S ribosomal protein L27
- Chain LR
- 60S ribosomal protein L34
- Chain SI
- 60S ribosomal protein L7-like 1
- Chain SM
- Pescadillo homolog
- Chain SS
- Ribosome biogenesis protein BOP1
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