J3_8FKZ_005
3D structure
- PDB id
- 8FKZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State G)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8FKZ|1|L3|U|2788, 8FKZ|1|L3|A|2789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FKZ_005 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0905
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FKZ|1|L3|G|2402
8FKZ|1|L3|A|2403
8FKZ|1|L3|A|2404
8FKZ|1|L3|G|2405
*
8FKZ|1|L3|C|2785
8FKZ|1|L3|C|2786
8FKZ|1|L3|A|2787
8FKZ|1|L3|U|2788
8FKZ|1|L3|A|2789
8FKZ|1|L3|U|2790
8FKZ|1|L3|C|2791
*
8FKZ|1|L3|G|2800
8FKZ|1|L3|U|2801
8FKZ|1|L3|C|2802
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L34
- Chain LW
- 60S ribosomal protein L37
- Chain LZ
- 60S ribosomal protein L39
Coloring options: