J3_8FL6_010

3D structure

PDB id

8FL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAUC*GU(PSU)(OMG)G*CCACUAAUA

Length

18 nucleotides

Bulged bases

8FL6|1|L3|A|4464, 8FL6|1|L3|U|4465

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL6|1|L3|U|4463
8FL6|1|L3|A|4464
8FL6|1|L3|U|4465
8FL6|1|L3|C|4466
*
8FL6|1|L3|G|4491
8FL6|1|L3|U|4492
8FL6|1|L3|PSU|4493
8FL6|1|L3|OMG|4494
8FL6|1|L3|G|4495
*
8FL6|1|L3|C|4505
8FL6|1|L3|C|4506
8FL6|1|L3|A|4507
8FL6|1|L3|C|4508
8FL6|1|L3|U|4509
8FL6|1|L3|A|4510
8FL6|1|L3|A|4511
8FL6|1|L3|U|4512
8FL6|1|L3|A|4513

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L23

Chain LN

60S ribosomal protein L3

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NK

Protein LLP homolog

Chain SR

GTP-binding protein 4