J3_8FL9_005

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8FL9|1|L3|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FL9_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.114

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8FL9|1|L3|C|2393
8FL9|1|L3|G|2394
8FL9|1|L3|A|2395
8FL9|1|L3|A|2396
8FL9|1|L3|G|2397
8FL9|1|L3|U|2398
8FL9|1|L3|G|2399
*
8FL9|1|L3|C|2805
8FL9|1|L3|A|2806
8FL9|1|L3|A|2807
*
8FL9|1|L3|U|2819
8FL9|1|L3|C|2820
8FL9|1|L3|U|2821
8FL9|1|L3|G|2822

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LR

60S ribosomal protein L34

Chain SR

GTP-binding protein 4