J3_8FL9_010

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UAUC*GU(PSU)(OMG)G*CCACUAAUA

Length

18 nucleotides

Bulged bases

8FL9|1|L3|A|4464, 8FL9|1|L3|U|4465

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL9|1|L3|U|4463
8FL9|1|L3|A|4464
8FL9|1|L3|U|4465
8FL9|1|L3|C|4466
*
8FL9|1|L3|G|4491
8FL9|1|L3|U|4492
8FL9|1|L3|PSU|4493
8FL9|1|L3|OMG|4494
8FL9|1|L3|G|4495
*
8FL9|1|L3|C|4505
8FL9|1|L3|C|4506
8FL9|1|L3|A|4507
8FL9|1|L3|C|4508
8FL9|1|L3|U|4509
8FL9|1|L3|A|4510
8FL9|1|L3|A|4511
8FL9|1|L3|U|4512
8FL9|1|L3|A|4513

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L23

Chain LN

60S ribosomal protein L3

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NK

Protein LLP homolog

Chain SR

GTP-binding protein 4