J3_8FL9_025

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8FL9|1|L3|U|4882, 8FL9|1|L3|A|4938, 8FL9|1|L3|C|4940, 8FL9|1|L3|A|4943, 8FL9|1|L3|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL9|1|L3|G|4751
8FL9|1|L3|U|4752
8FL9|1|L3|U|4753
8FL9|1|L3|G|4754
*
8FL9|1|L3|C|4879
8FL9|1|L3|C|4880
8FL9|1|L3|U|4881
8FL9|1|L3|U|4882
8FL9|1|L3|C|4883
*
8FL9|1|L3|G|4936
8FL9|1|L3|C|4937
8FL9|1|L3|A|4938
8FL9|1|L3|C|4939
8FL9|1|L3|C|4940
8FL9|1|L3|G|4941
8FL9|1|L3|C|4942
8FL9|1|L3|A|4943
8FL9|1|L3|C|4944
8FL9|1|L3|G|4945
8FL9|1|L3|U|4946
8FL9|1|L3|U|4947
8FL9|1|L3|C|4948

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LT

60S ribosomal protein L35a

Chain SC

60S ribosomal protein L6