J3_8FLF_002
3D structure
- PDB id
- 8FLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State L3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8FLF|1|L3|G|1641
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FLF_002 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1659
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FLF|1|L3|U|1531
8FLF|1|L3|G|1532
8FLF|1|L3|A|1533
8FLF|1|L3|A2M|1534
8FLF|1|L3|C|1535
8FLF|1|L3|PSU|1536
8FLF|1|L3|A|1537
*
8FLF|1|L3|U|1622
8FLF|1|L3|A|1623
8FLF|1|L3|G|1624
*
8FLF|1|L3|C|1640
8FLF|1|L3|G|1641
8FLF|1|L3|A|1642
8FLF|1|L3|A|1643
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L9
- 60S ribosomal protein L15
- Chain LW
- 60S ribosomal protein L37
- Chain LZ
- 60S ribosomal protein L39
- Chain SF
- 60S ribosomal protein L8
- Chain SR
- GTP-binding protein 4
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