J3_8FOM_019

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FOM_019 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.5904

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8FOM|1|RA|G|1055
8FOM|1|RA|G|1056
8FOM|1|RA|A|1057
*
8FOM|1|RA|U|1081
8FOM|1|RA|U|1082
8FOM|1|RA|U|1083
8FOM|1|RA|A|1084
8FOM|1|RA|A|1085
8FOM|1|RA|A|1086
8FOM|1|RA|G|1087
*
8FOM|1|RA|C|1102
8FOM|1|RA|A|1103
8FOM|1|RA|C|1104

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36