J3_8FOM_032

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8FOM|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FOM_032 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0945

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

8FOM|1|XA|C|826
8FOM|1|XA|U|827
8FOM|1|XA|A|828
8FOM|1|XA|G|829
*
8FOM|1|XA|C|857
8FOM|1|XA|G|858
8FOM|1|XA|A|859
8FOM|1|XA|A|860
8FOM|1|XA|G|861
*
8FOM|1|XA|C|868
8FOM|1|XA|G|869
8FOM|1|XA|U|870
8FOM|1|XA|U|871
8FOM|1|XA|A|872
8FOM|1|XA|A|873
8FOM|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8

Chain XX

mRNA