J3_8FOM_073
3D structure
- PDB id
- 8FOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 8FOM|1|YA|U|504, 8FOM|1|YA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FOM_073 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1554
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8FOM|1|YA|G|30
8FOM|1|YA|C|31
*
8FOM|1|YA|G|474
8FOM|1|YA|U|475
8FOM|1|YA|G|476
8FOM|1|YA|A|477
8FOM|1|YA|A|478
8FOM|1|YA|A|479
8FOM|1|YA|A|480
8FOM|1|YA|G|481
8FOM|1|YA|A|482
8FOM|1|YA|A|483
8FOM|1|YA|C|484
*
8FOM|1|YA|G|496
8FOM|1|YA|A|497
8FOM|1|YA|G|498
8FOM|1|YA|U|499
8FOM|1|YA|G|500
8FOM|1|YA|A|501
8FOM|1|YA|A|502
8FOM|1|YA|A|503
8FOM|1|YA|U|504
8FOM|1|YA|A|505
8FOM|1|YA|G|506
8FOM|1|YA|A|507
8FOM|1|YA|G|508
8FOM|1|YA|C|509
8FOM|1|YA|C|510
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
- Chain YY
- 50S ribosomal protein L24
Coloring options: