J3_8FON_031

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8FON|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.155

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

8FON|1|XA|C|826
8FON|1|XA|U|827
8FON|1|XA|A|828
8FON|1|XA|G|829
*
8FON|1|XA|C|857
8FON|1|XA|G|858
8FON|1|XA|A|859
8FON|1|XA|A|860
8FON|1|XA|G|861
*
8FON|1|XA|C|868
8FON|1|XA|G|869
8FON|1|XA|U|870
8FON|1|XA|U|871
8FON|1|XA|A|872
8FON|1|XA|A|873
8FON|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8

Chain XX

mRNA