J3_8FON_055

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

8FON|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_055 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0784

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8FON|1|QA|G|46
8FON|1|QA|C|47
8FON|1|QA|C|48
8FON|1|QA|U|49
8FON|1|QA|A|50
8FON|1|QA|A|51
8FON|1|QA|G|52
*
8FON|1|QA|U|359
8FON|1|QA|A|360
8FON|1|QA|G|361
8FON|1|QA|G|362
8FON|1|QA|A|363
8FON|1|QA|A|364
8FON|1|QA|U|365
8FON|1|QA|C|366
8FON|1|QA|U|367
*
8FON|1|QA|A|393
8FON|1|QA|G|394
8FON|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9