J3_8FON_071

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8FON|1|XA|U|1212, 8FON|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FON_071 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1527

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8FON|1|XA|C|990
8FON|1|XA|U|991
8FON|1|XA|U|992
8FON|1|XA|G|993
8FON|1|XA|A|994
8FON|1|XA|C|995
8FON|1|XA|A|996
8FON|1|XA|U|997
*
8FON|1|XA|A|1044
8FON|1|XA|C|1045
8FON|1|XA|A|1046
8FON|1|XA|G|1047
*
8FON|1|XA|C|1210
8FON|1|XA|U|1211
8FON|1|XA|U|1212
8FON|1|XA|A|1213
8FON|1|XA|C|1214
8FON|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XN

30S ribosomal protein S14 type Z