J3_8FR8_005

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FR8_005 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1068

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8FR8|1|A|C|1413
8FR8|1|A|G|1414
8FR8|1|A|A|1415
8FR8|1|A|A|1416
8FR8|1|A|A|1417
8FR8|1|A|G|1418
*
8FR8|1|A|C|1843
8FR8|1|A|A|1844
8FR8|1|A|G|1845
*
8FR8|1|A|U|1857
8FR8|1|A|A|1858
8FR8|1|A|A|1859
8FR8|1|A|G|1860

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains